Publications

ZORA Publication List

Publications

• 2024

  • Journal Article

    • Cola, Reto B; Niethammer, Salome N; Rajamannar, Preethi; Gresch, Andrea; Bhat, Musadiq A; Assoumou, Kevin; Williams, Elyse T; Hauck, Patrick; Hartrampf, Nina; Benke, Dietmar; Stoeber, Miriam; Levkowitz, Gil; Melzer, Sarah; Patriarchi, Tommaso (2024). Probing PAC1 receptor activation across species with an engineered sensor. eLife, 13:RP96496.
    • Labouesse, Marie A; Wilhelm, Maria; Kagiampaki, Zacharoula; Yee, Andrew G; Denis, Raphaelle; Harada, Masaya; Gresch, Andrea; Marinescu, Alina-Măriuca; Otomo, Kanako; Curreli, Sebastiano; Serratosa Capdevila, Laia; Zhou, Xuehan; Cola, Reto B; Ravotto, Luca; Glück, Chaim; Cherepanov, Stanislav; Weber, Bruno; Zhou, Xin; Katner, Jason; Svensson, Kjell A; Fellin, Tommaso; Trudeau, Louis-Eric; Ford, Christopher P; Sych, Yaroslav; Patriarchi, Tommaso (2024). A chemogenetic approach for dopamine imaging with tunable sensitivity. Nature Communications, 15(1):5551.
    • Viskaitis, Paulius; Tesmer, Alexander L; Liu, Ziyu; Karnani, Mahesh M; Arnold, Myrtha; Donegan, Dane; Bracey, Eva; Grujic, Nikola; Patriarchi, Tommaso; Peleg-Raibstein, Daria; Burdakov, Denis (2024). Orexin neurons track temporal features of blood glucose in behaving mice. Nature Neuroscience, 27(7):1299-1308.
    • Zhou, Xuehan; Stine, Carrie; Prada, Patricia Oliveira; Fusca, Debora; Assoumou, Kevin; Dernic, Jan; Bhat, Musadiq A; Achanta, Ananya S; Johnson, Joseph C; Pasqualini, Amanda Loren; Jadhav, Sanjana; Bauder, Corinna A; Steuernagel, Lukas; Ravotto, Luca; Benke, Dietmar; Weber, Bruno; Suko, Azra; Palmiter, Richard D; Stoeber, Miriam; Kloppenburg, Peter; Brüning, Jens C; Bruchas, Michael R; Patriarchi, Tommaso (2024). Development of a genetically encoded sensor for probing endogenous nociceptin opioid peptide release. Nature Communications, 15(1):5353.
    • Harada, Masaya; Capdevila, Laia Serratosa; Wilhelm, Maria; Burdakov, Denis; Patriarchi, Tommaso (2024). Stimulation of VTA dopamine inputs to LH upregulates orexin neuronal activity in a DRD2-dependent manner. eLife, 12:RP90158.
    • Simpson, Eleanor H; Akam, Thomas; Patriarchi, Tommaso; Blanco-Pozo, Marta; Burgeno, Lauren M; Mohebi, Ali; Cragg, Stephanie J; Walton, Mark E (2024). Lights, fiber, action! A primer on in vivo fiber photometry. Neuron, 112(5):718-739.
    • Rohner, Valentin Lu; Lamothe-Molina, Paul J; Patriarchi, Tommaso (2024). Engineering, applications, and future perspectives of GPCR-based genetically encoded fluorescent indicators for neuromodulators. Journal of Neurochemistry, 168(3):163-184.
    • Stuber, Annina; Cavaccini, Anna; Manole, Andreea; Burdina, Anna; Massoud, Yassine; Patriarchi, Tommaso; Karayannis, Theofanis; Nakatsuka, Nako (2024). Interfacing Aptamer-Modified Nanopipettes with Neuronal Media and Ex Vivo Brain Tissue. ACS Measurement Science Au, 4(1):92-103.

• 2023

  • Journal Article

    • Salinas, Armando G; Lee, Jeong Oen; Augustin, Shana M; Zhang, Shiliang; Patriarchi, Tommaso; Tian, Lin; Morales, Marisela; Mateo, Yolanda; Lovinger, David M (2023). Distinct sub-second dopamine signaling in dorsolateral striatum measured by a genetically-encoded fluorescent sensor. Nature Communications, 14(1):5915.
    • Kagiampaki, Zacharoula; Rohner, Valentin; Kiss, Cedric; Curreli, Sebastiano; Dieter, Alexander; Wilhelm, Maria; Harada, Masaya; Duss, Sian N; Dernic, Jan; Bhat, Musadiq A; Zhou, Xuehan; Ravotto, Luca; Ziebarth, Tim; Wasielewski, Laura Moreno; Sönmez, Latife; Benke, Dietmar; Weber, Bruno; Bohacek, Johannes; Reiner, Andreas; Wiegert, J Simon; Fellin, Tommaso; Patriarchi, Tommaso (2023). Sensitive multicolor indicators for monitoring norepinephrine in vivo. Nature Methods, 20(9):1426-1436.
    • Duffet, Loïc; Williams, Elyse T; Gresch, Andrea; Chen, Simin; Bhat, Musadiq A; Benke, Dietmar; Hartrampf, Nina; Patriarchi, Tommaso (2023). Optical tools for visualizing and controlling human GLP-1 receptor activation with high spatiotemporal resolution. eLife, 12:RP86628.

• 2022

  • Journal Article

    • Duffet, Loic; Tatarskiy, Petr V; Harada, Masaya; Williams, Elyse T; Hartrampf, Nina; Patriarchi, Tommaso (2022). A photocaged orexin-B for spatiotemporally precise control of orexin signaling. Cell Chemical Biology, 29(12):1729-1738.e8.
    • Patriarchi, Tommaso (2022). New Technologies to Investigate Neuropeptides at Scale. ACS Chemical Neuroscience, 13(16):2353-2355.
    • Klein Herenbrink, Carmen; Støier, Jonatan Fullerton; Reith, William Dalseg; Dagra, Abeer; Gregorek, Miguel Alejandro Cuadrado; Cola, Reto B; Patriarchi, Tommaso; Li, Yulong; Tian, Lin; Gether, Ulrik; Herborg, Freja (2022). Multimodal detection of dopamine by sniffer cells expressing genetically encoded fluorescent sensors. Communications Biology, 5:578.
    • Patriarchi, Tommaso; Beyeler, Anna (2022). State of the art imaging of neurotransmission in animal models. Journal of Neuroscience Methods, 376:109623.
    • Duffet, Loïc; Kosar, Seher; Panniello, Mariangela; Viberti, Bianca; Bracey, Edward; Zych, Anna D; Radoux-Mergault, Arthur; Zhou, Xuehan; Dernic, Jan; Ravotto, Luca; Tsai, Yuan-Chen; Figueiredo, Marta; Tyagarajan, Shiva K; Weber, Bruno; Stoeber, Miriam; Gogolla, Nadine; Schmidt, Markus H; Adamantidis, Antoine R; Fellin, Tommaso; Burdakov, Denis; Patriarchi, Tommaso (2022). Author Correction: A genetically encoded sensor for in vivo imaging of orexin neuropeptides. Nature Methods, 19(4):505.
    • Duffet, Loïc; Kosar, Seher; Panniello, Mariangela; Viberti, Bianca; Bracey, Edward; Zych, Anna D; Radoux-Mergault, Arthur; Zhou, Xuehan; Dernic, Jan; Ravotto, Luca; Tsai, Yuan-Chen; Figueiredo, Marta; Tyagarajan, Shiva K; Weber, Bruno; Stoeber, Miriam; Gogolla, Nadine; Schmidt, Markus H; Adamantidis, Antoine R; Fellin, Tommaso; Burdakov, Denis; Patriarchi, Tommaso (2022). A genetically encoded sensor for in vivo imaging of orexin neuropeptides. Nature Methods, 19(2):231-241.

  • Working Paper

    • Salinas, Armando G; Lee, Jeong O; Augustin, Shana M; Zhang, Shiliang; Patriarchi, Tommaso; Tian, Lin; Morales, Marisela; Mateo, Yolanda; Lovinger, David M (2022). Sub-second striatal dopamine dynamics assessed by simultaneous fast-scan cyclic voltammetry and fluorescence biosensor. bioRxiv 475513, Cold Spring Harbor Laboratory.

• 2021

  • Journal Article

    • Labouesse, Marie A; Patriarchi, Tommaso (2021). A versatile GPCR toolkit to track in vivo neuromodulation: not a one-size-fits-all sensor. Neuropsychopharmacology, 46(12):2043-2047.
    • Copits, Bryan A; Gowrishankar, Raaj; O’Neill, Patrick R; Li, Jun-Nan; Girven, Kasey S; Yoo, Judy J; Meshik, Xenia; Parker, Kyle E; Spangler, Skylar M; Elerding, Abigail J; Brown, Bobbie J; Shirley, Sofia E; Ma, Kelly K L; Vasquez, Alexis M; Stander, M Christine; Kalyanaraman, Vani; Vogt, Sherri K; Samineni, Vijay K; Patriarchi, Tommaso; Tian, Lin; Gautam, N; Sunahara, Roger K; Gereau, Robert W; Bruchas, Michael R (2021). A photoswitchable GPCR-based opsin for presynaptic inhibition. Neuron, 109(11):1791-1809.e11.

Pagination